Can ktrim handle gzipped files?

Open shengwang opened this issue 5 years ago • 3 comments

Mar 20 '20 03:03 shengwang

Currently no. Maybe it could handle compressed files in the feature versions. However, I think that working on compressed files will signficantly slow down the analysis.

Mar 24 '20 03:03 hellosunking

The amount of NGS data is huge, if you decompress all compressed fq files, it will take a lot of space

Apr 02 '20 08:04 flystar233

Hi shengwang and flystar,

I have released version 1.2.0 of Ktrim, which contains various improvements including support for Gzip-compressed files. Please have a try :).

Jun 30 '20 09:06 hellosunking