hdore

[BUG] Ecophylo workflow: constraints on hmm_list.txt (hmm_source)

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Hi Anvi'o developers! ## Short description of the problem I've been trying to use the Ecophylo workflow (actually for now just to save the workflow graph) and I am getting...

Inconsistent values in _pooled_SNV_data.tsv

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Hi @MrOlm and other inStrain contributors, I am a bit confused about the results I obtained using inStrain compare to get pooled SNV profiles. My understanding is that the file...

[FEATURE REQUEST] Report contig circularity

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## The need Hi Anvi'o! I was reading through the methods of this paper "Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess" (https://doi.org/10.1038/s41564-024-01610-3)...

Missing genomes/scaffolds in output: DEBUG FAILURE SplitException

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Hi @MrOlm, It's hdore again... I ran `inStrain profile` (the recently released v1.10) on an old metagenomes dataset and encountered an issue: some scaffolds are missing from the output. More...