hdore
hdore
Hi all, With a similar idea as @tseemann in mind, I'm wondering if `vg call` can accurately call variants for (haploid) bacterial genomes from metagenomics datasets. In issue #3369 @adamnovak...
Hi all, Thank you for your advice, I think getting the coverage of "variants" might indeed be a good way to accomplish what I want. I'm still learning how to...
Hi @ekg @adamnovak @glennhickey , Would you have any advice on the case I developed above? Thanks a lot for your help! Hugo
Hi @glennhickey, Thank you for your quick reply. Unfortunately in my case I can't use `vg call` because I'm using bacterial metagenomics sample, where there is no ploidy (the genomes...
Awesome, thank you!
Hi @ivagljiva, Thanks for going through old issues! I got useful insights from @mschecht on Discord in the meantime. I haven't tried to use EcoPhylo for a while, but since...
Hi @MrOlm, Thanks for your quick reply. I checked and I'm pretty sure I'm giving the .bam files is the same order as the profiles (I'm using `ls` so they...
Hi Matt, I'll send that by email. Thanks for looking into it! hdore
Hi @MrOlm Not sure what I did last time when I was trying to debug, I did not take notes. But you can take as an example scaffold G06_MAG_00026_000000000109 (it...
Hi @MrOlm Thanks for your input. I don't think I edited, deleted or moved any of the profiles, bam files or bam index files. If I understand the code correctly,...