Helen Attrill

Taxon/guidance note for skeletal muscle organ development

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@ukemi I am tagging you here as we've talked about this in the past #18657 Could you add a comment to GO:0060538 skeletal muscle organ development this along the lines...

leucocyte terms for taxon constraint

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Could you put a taxon constrain on: GO:0002443 | leukocyte mediated immunity GO:0045321 | leukocyte activation GO:0050900 | leukocyte migration I think that the appropriate taxid is Protostomia NCBI:txid33317 (From...

Please provide as much information as you can: * **Suggested term label:** cyclic-di-GMP transmembrane transporter activity * **Definition (free text)** Enables the transfer of cyclic-di-GMP from one side of a...

Taxon issues with neuroblast differentiation

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Taxon violations for fly annotations for GO:0014016 neuroblast differentiation and descendants: GO:0014019 neuroblast development GO:0014018 neuroblast fate specification GO:0014017 neuroblast fate commitment GO:0007400 neuroblast fate determination coming from the relation...

* **PTHR ID & PTN node:** * PTN002309998 * [GREMLIN 1 (PTHR15283)](http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15283) * **Sequences with problematic annotation (ID + gene/protein name):** * FB:FBgn0038901 , Burs * **Type of Issue: Erroneous...

When this term 'borate channel activity' is available: https://github.com/geneontology/go-ontology/issues/27487 The TAIR annotations to GO:0046715 active borate transmembrane transporter activity for UniProtKB:Q8LAI1 ; NIP7-1 PMID:21710975 UniProtKB:Q9SAI4 ; NIP6-1 PMID:18952773 UniProtKB: Q9SV84...

Species search for GO CAM on public website (geneontology.org/go-cam)

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When searching species/organism on https://geneontology.cloud/home Drosophila gets one hit -cGAS-Sting pathway (Drosophila) and D.mel gets 9 -all with D.mel in title and taxid:7227 0 and drosophila melanogaster 0 (there are...

Searching issues for Gene Ontology: Causal Activity Models on GO site

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A couple of issues come up when trying to search GO-CAMs on the GO site. https://geneontology.cloud/browse 1. For some organisms: c.elegans, D.mel, there is not a valid DBxref for the...

Display gene product 2 term relations

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The gp2term relations are not displayed on AmiGO - just the old qualifiers. Can we update this to match the current annotations, please?

The 'Filter by Term' search on the landing page does not search over the 'regulates' relation, which can result in models being missed. So, searching with the term 'regulation of...