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Searching issues for Gene Ontology: Causal Activity Models on GO site
A couple of issues come up when trying to search GO-CAMs on the GO site. https://geneontology.cloud/browse
- For some organisms: c.elegans, D.mel, there is not a valid DBxref for the entity
When clicking on Gene Products get errors like this:
Resolution request 'wormbase/WBGene00012019' is NOT A NAMESPACE; INVALID Compact Identifier resolution request for 'wormbase/WBGene00012019'
Resolution request 'flybase/FBgn0262582' is NOT A NAMESPACE; INVALID Compact Identifier resolution request for 'flybase/FBgn0262582'
Seems to be ok for mouse.
- When searching with a species, it just uses an exact text search e.g. Drosophila -> 1 model ; D.mel -> 7 models
Models for species should be retrieved by mapping to the taxon ID for consistency mapping species name/synonyms mapping to Taxon ID in model.
Drawing the eye of @pgaudet . There are some known problems with the GO-CAM (formally http://geneontology.org/go-cam). It has been frozen for some time now, but if fixes are not trivial, maybe we can prioritize one of the projects that would replace it (AmiGO-ization or the replacement widget).