Dan Handwerker

Add more tests for the html report

1

### Summary The functions that generates the html reports have almost no testing coverage. No one is actively working on that code, but if more visualizations of outputs might be...

Generate metrics from external regressors using F stats

7

Closes #1009. This is an alternative approach to #1008 and #1021. If a user provides external regressors, this will calculate a fit to those regressors to include as metrics in...

Repeated nilearn warning message for report

1

### Summary For certain anatomical images, nilearn is outputting the same warning message repeatedly (over 50 times in a run). It would be good to see if there is a...

Dead links in AFNI program documentation

1

I was looking at https://afni.nimh.nih.gov/pub/dist/doc/program_help/@chauffeur_afni.html and noticed links for other programs, like 3dAutobox and 3dAutomask. The included links are from an older website structure ( https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/programs/3dAutobox_sphx.html & https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/programs/3dAutomask_sphx.html ) rather...

I'm canceling our August 2024 developers' call because, [on Mattermost](https://mattermost.brainhack.org/brainhack/channels/tedana) several regulars said they couldn't attend and no one said they could. Also, our previous call was only 3 weeks...

Adding a conservative elbow-free decision tree

2

### Summary This is based on an OHBM2024 discussion with @moser297 that was discussed at our [July 2024 developer call](https://docs.google.com/document/d/1o4dsvFB1r6SeqdUOWEQyIODSWKYb15-B5135KLLhGgg/edit?usp=sharing). The kappa and rho elbows do not robustly appear in...