cycledash
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hammerlab
Variant Caller Analysis Dashboard and Data Management System
@iskandr: > PGV relies on allele-specific quantification of expression from RNAseq, how can that data be shown in Cycledash? from https://github.com/hammerlab/cycledash/issues/852
cf. https://github.com/hammerlab/cycledash/blob/master/cycledash/bams.py#L34 BAMs should be unique on `project_id, uri`, not just `uri`. A duplicate BAM submission should return `HTTP 409` ("conflict") not `400` (as it does now, "malformed request").
Worker status says "uploading..." even though file is already uploaded:  It is a little bit misleading as it is just workers doing...
...and update its position as the user clicks on different variants in the Examine page. This way the user has a little breathing room to read and filter the VCF...
pileup currently fetches variants directly from the VCF file and alignments directly from the BAM file. It would make more sense for it to pull in variants either via the...
Go to the Login page. Hit the "Login" button with an empty form. You'll get an Internal Server error, with this trace: ``` File "/Users/danvk/github/cycledash/cycledash/auth.py", line 33, in login user...
When comparing two VCFs, there should be a header added to the common variants column that would enable a user to sort by that column. This way the user can...