Haibo Liu

I found the same error. Could the developer give some comment? Thanks, Dr. Yu.

Hello Wenbao, Thank you for your quick response. I did run like that. But the integrate module seems not to perform all downstream analysis. So I ran downstream after integration,...

Thank you, Wenbao, for the instructions. One question is how I should provide an scATAC-pro-aware BAM file for the merge experiment for downstream analysis. Do I need to manually merge...

Thanks again, Wenbao. I think I need to run all the steps except "split_bam" after integration. By the way, does the pipeline remove duplicates in the final filtered, sorted BAM...

Got it. Thank you. Haibo On Tue, Aug 23, 2022 at 11:52 AM Wenbao Yu ***@***.***> wrote: > The duplicates were not removed from the bam file. (But note that...

I encountered the same problem. It works for me when the BAM file coming from 35-bp read alignment, but not for BAM file coming from 100-bp read alignment. I think...