Hafiz Muhammad Talha

Illegal division by zero error

2

I am running roary on using following command roary -f ./demo -e -t 4 -p 10 -n *.gff and I got following errors 1-Use of uninitialized value in require at...

Is there any way I could use CARD or resfinder database for my taxonomy assignment using krakenuniq? I am just curious if there is a way to do this. ?...

can I use snippy for variants calling in a virus genome ??

docker run -v pwd:pwd -w pwd humanlongevity/hla --sample_id 'SU-DIPG_24' --input_bam_path SU-DIPG-24.bam --output_path myoutput [31/Jul/2022 11:37:10] INFO - Xie Chao's HLA typing algorithm [31/Jul/2022 11:37:10] INFO - Sample_id: SU-DIPG_24 Input file:...

what(): 'database_10916': File truncated

1

I am facing the following issue. downloading step didn't show any error or warning. but every time I run the build command this error comes up. terminate called after throwing...

Update spades installed with unicycler

3

How can I update the spades installed with unicycler ? I had spades 3.15 installed but when I installed unicycler with apt-get it rewrote the spades to v3.13. I updated...

Error in `/home/user/anaconda3/bin/python': corrupted double-linked list: 0x00007f8b64460a90

1

I m facing this error while running Unciycler. Error came at bridging long read stage. any help ? 173, 53, -96, 50, 179, -5, -133 *** Error in `/home/user/anaconda3/bin/python': corrupted...

parsnp not creating vcf file

1

I followed the given pipeline to create vcf file from parsnp to further use it for genotyphi.. Commands runs ok but not creating vcf file. any help ?