EaCoN

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affy.wave.compute not found

9

Thanks for this package! Could you tell me how to compute the wave for Oncoscan_CNV and hg38? Wave re-normalization ... [lski2446:35064] Could not find a Wave data package for [OncoScan_CNV,...

apastore

Hello EaCoN team, I have used your package for calling CNVs in several analyses now and am preparing a manuscript based on the results. Curious if you have a paper...

ChristopherEeles

Error when loading the BSgenome with the latest EaCoN

1

Hello, I updated my EaCoN package to process the WES data and got the following error message: Error in (function (classes, fdef, mtable) : unable to find an inherited method...

chshangy

Error generating the L2R files on SNP 6.0 arrays

2

Hello, when running the command on the SNP6.0 arrays: SNP6.Process(CEL= "file.CEL", samplename = 'Sample_name, genome.pkg = "BSgenome.Hsapiens.UCSC.hg19") I got the following error Error: Assigned data `unlist(cs$chrom2chr[ao.df$chr])` must be compatible with...

aliciapliego

Feature request: tidy save L2R Baf and gene tables

4

Hi one more question, would be possible to export ( eventually in one result project folder) all the seg file, gene tables L2R and BAF tables? Also ASCAT and FACET...

apastore

Windows version of APT not compatible

2

Hi @CS-GustaveRoussy, Thanks for this marvelous pipeline. I'm having a problem I think with the Windows version I'm using... the error message (sorry because it's in spanish) says that this...

jgarces02