Error generating the L2R files on SNP 6.0 arrays

[aliciapliego]

Hello, when running the command on the SNP6.0 arrays: SNP6.Process(CEL= "file.CEL", samplename = 'Sample_name, genome.pkg = "BSgenome.Hsapiens.UCSC.hg19")

I got the following error Error: Assigned data unlist(cs$chrom2chr[ao.df$chr]) must be compatible with existing data. x Existing data has 1813358 rows. x Assigned data has 357939 rows.

Any ideas why this is happening? Thanks in advance