Windows version of APT not compatible

[jgarces02]

Hi @CS-GustaveRoussy,

Thanks for this marvelous pipeline. I'm having a problem I think with the Windows version I'm using... the error message (sorry because it's in spanish) says that this APT app is of 16 bits and my Windows (64 bits, Windows 10) seems not to support it.

And this is the log that appears in the R terminal:

 [U1090720:2028] Decompressing ../data/12443-CPP_MO_(CytoScanHD_Array).CEL ...
 [U1090720:2028] OS is reported as windows
 [U1090720:2028] Running APT ...
Error in system(command = paste0(apt.cmd, collapse = ""), intern = TRUE) : 
  'CreateProcess' failed to run 'C:\Users\jgarces\DOCUME~1\R\WIN-LI~1\3.5\APTCYT~1.0\apt\bin\APT-CO~1.EXE --allele-peak-count 24 --nearest-power-of-two 512 --keep-intermediate-data false --dual-channel-normalization false --mangle-probeset-names false --waviness-block-size 50 --waviness-genomic-span 0 --igender-male-threshold 1.5 --igender-female-threshold 0.9 --sig-gender-xx-cutoff 0.61 --sig-gender-xx-cutoff-high 0.95 --sig-gender-y-cutoff 0.58 --sig-gender-reference-chromosome 2 --force false 
Error in if (!file.exists(oscf)) return(cmdres) : 
  argument is of length zero

Could you help me, please? I cannot find another version of this APT on the internet...

Thanks in advance for your attention. Best regards.