Gregor Sturm

I don't think lint will pass before the template update is merged. However, since this is such massive PR, I'd do that *after* this one gets merged to dev to...

If we have such a list, we could add a function to `pytest-workflow` which warns/fails if such a file was generated and not compressed.

Just got pointed to this: https://prettier.io/blog/2023/11/30/cli-deep-dive Apparently prettier is working on a next-gen CLI that's faster

What about markdown?

We could have [mdformat](https://github.com/hukkin/mdformat?tab=readme-ov-file#installing) as a dedicated hook for markdown formatting. Allegedly, it supports myst.

yes... we can make the next release at the paris hackathon.

I guess we could disable colon fences in the myst configuration?

IMO DREAM is the prime candidate for mixed effect models on expression data. - [ ] create module for [DREAM](https://gabrielhoffman.github.io/variancePartition/articles/dream.html#dream-analysis). It should work farily similar as the limma module -...

Let's keep this open until it's actually in the pipeline

This is now merged in `dev` #446