Gregor Sturm

> If the read the Docs build is succesfull we are able to investigate the tutorial on the website interface, right? yes

> is it possible to include the .h5mu file that I used to load the 5k B-cells for the tutorial somewhere into github? It is a rather large file (~2...

- [x] Just thinking twice, it might be easiest if you just send me the file, then I can add it to the existing figshare where the other datasets are...

- [x] Regarding preprocessing, did you also check out if [nf-core/airrflow](https://github.com/nf-core/airrflow) is an option for re-annoation? That could also be a pretty smooth workflow to run a nextflow pipeline first...

Just dropping comments here as I go through the notebook... - [x] Section Define clonotype clusters: I don't really see the bimodality in the plots. Is this just an issue...

- [x] possibly remove the hill diversity section for now and re-add it as part of #535 (just in case we don't wrap up #535 first)

For now, I removed a few sections that depend on other open PRs (#536, #534, #535) and copied the content over to those PRs. I believe like that we can...

I went through the remaining bits and also added a reference to AIRRflow. Thanks for your patience and persistence while working on this! We'll follow up on the missing pieces...

It is possible to build groovy objects that have properties that are ignored by nextflow caching. Would it work to put the paramset names in such an object? in `lib/datacontainer.groovy`:...

Hi, thanks for reporting. I cannot reproduce this, have you tried re-creating the environment? Or force-reinstalling the python-levenshtein package?