Gregor Sturm

Maybe this can be fixed in anndata directly. There's no good reason for this to be slow. I'll open a ticket. If they cant or dont want to fix it,...

https://github.com/scverse/anndata/issues/1684

I agree, fixing this in AnnData would take too long and the proposed solution only addresses storing as zarr but not h5ad. Let's go with the JSON solution you proposed...

FWIW, I don't have a symlink, but use a non-standard path for `.vscode-server` using `remote.SSH.serverInstallPath` in `settings.json`. I am experiencing the same issue.

Could it matter if the symlink points to a different device than the one of the home directory? I can try the insider version, but can't promise I find the...

Appears to work for me as well in 1.95.1

@atrigila, could you please also take a look at this? Let's get this in and then make a release.

> As discussed on slack, it would be great if the output DESeq2 csv differential files could have both gene_id and gene_name (or Symbol or whatever) included. Right now, only...

I made an initial release of `deres` to be played around with. It still lacks proper test cases and some other things should be improved (see issues). But the basic...

1) are you sure the jupyter notebook is only using one core (i.e. did you verify in e.g. htop)? Not all schedulers enforce that. 2) have you considered the tcrdist...