Gregor Sturm

Hi @jpivarski, thanks for another extensive explanation. This actually goes one step further in the discussion than I had expected, but this helps a lot for the implementation of the...

@jpivarski, one more thing I haven't fully understood is how an `ak.Array` compares to an `ak.Record`. E.g. AIRR Rearrangement data is essentially a list of chain-dictionaries for each cell. Every...

Tests currently fail (among other things) because https://github.com/scikit-hep/awkward/issues/1557 leads to inconsistent dimensions during concatenation. Need to update to v2 API of awkward and wait for this to be fixed. I...

Because i need to type `adata` twice in the same expression ;) On Wed, Apr 13, 2022, 20:16 Davide Cittaro ***@***.***> wrote: > Why not simply > > adata_t =...

In GitLab by @grst on Mar 31, 2020, 16:57 Example implementation by @szabogtamas  However, this has been computed on the old version of the dataset where the clonotypes were...

(commented on wrong issue)

Hi @bcorrie, thanks for reaching out, I'm definitely interested in working with the AIRR community to make this as interoperable as possible. Your description of the `Cell` schema is really...

# Draft proposal for an awkward-array-based data structure I've been playing around with the draft implementation of awkward array support in AnnData (https://github.com/scverse/anndata/pull/647). This allows to store in `.obsm` (or...

@bcorrie, this should make it possible that we merely define a mapping how the AIRR standard is represented as AnnData object rather than converting between a `scirpy` and an `AIRR`...

> I've recently heard people wanting to treat their re-arrangment data as a separate modality. Wouldn't it anyway work with both anndata and mudata to use `.obsm["airr"]`. ```python # anndata...