Gregor Sturm

> It seems like knowing that things execute piece by piece (since the pipe w/ >> is all binary operations) feels simpler than an outer function (even if it's a...

Is there any progress on this? I found [this paper by Zimmermann et al.](https://doi.org/10.1038/s41467-021-21038-1) making a strong point in favor of mixed effects models for single-cell DE analysis, and it...

Thanks, that worked (with version 0.6.13)! ``` Completed at: 12-Nov-2019 13:50:06 Duration : 5m 6s CPU hours : 0.1 Succeeded : 1 ``` With version 0.7.1 it runs for several...

Hi David, thanks for your feedback! > Weights are going to come, hopefully this month. We are switching the tf1 backend to tf2 and adding a numpy/dask backend, the weighting...

Btw, the example data is also available here as `tsv` files, it's probably easier for you than running the entire pipeline: https://github.com/grst/benchmark-single-cell-de-analysis/tree/master/diffxpy_test Also, I have the impression that 0.7.1 runs...

might be, but I don't remember at all, sorry! On Wed, 16 Mar 2022 at 15:48, Isaac Virshup ***@***.***> wrote: > Ah, yeah I vaguely recall something like this. I...

I see this warning in a lot of different places with anndata 0.7.8. I temporarily added ```python import warnings warnings.simplefilter(action='ignore', category=FutureWarning) ``` to the scirpy tutorials to reduce the noise...

Probably makes sense to implement this before we move to supporting Awkward Arrays (or fwiw other data types) in `adata.X` (see also #647). I was wondering if it would make...

I started playing around with this and it looks really neat! :rocket: I was wondering if it is planned to support `obs` with only some "awkward" columns? ```python adata =...

The pandas extension sounds great! It also sounds like a lot of work though :/ How hard would it be to implement awkward array support for `.X`? In https://github.com/scverse/scirpy/issues/327#issuecomment-1172977130 it...