civic-v2
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griffithlab
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
Current URL gives a 404 - current URL https://pecan.stjude.cloud/proteinpaint/ALK/hg19/civic Updating to this style will work - https://pecan.stjude.cloud/variants/protein-paint?gene=BRAF But that doesn't automatically activate the CIViC button (users have to click on...
In civic v1, always shows the gene/variant names. In the V2 curation timeline: https://civicdb.org/curation/activity/curation-timeline We only see the event type and the entity IDs. Browsing through its hard to find...
Currently the activity feed shows 17 events when you land on the page and clicking on "Load More" loads an additional 17 events. The activity feed can get filled-up very...
Use an at-mention component to allow a user (only editors? the suggester of the source?) to assign a user a source suggestion to curate from the publication queue, and display...
With revisions now being per field, it should be fairly straightforward to grant permissions to users to approve changes only to specific fields (say, genomic coordinates and HPO terms, but...
- add filter info to total/displayed info at top right - improve 'no data' message to include info about what fields are currently applied, and how to reset filters -...
- [x] Remove association of assertions & evidence with variants - [x] Rename postgres table drugs->therapies - [x] Activerecord model rename - [x] Remove logic mapping therapy_id drug_id - [x]...
Draft some text that makes it clear that N/A means a different, more specific, code set is being used rather than that no codes apply
Potentially can import domain specific code sets from here: https://cspec.genome.network/cspec/ui/svi/
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CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer