Ivan Anishchenko
Ivan Anishchenko
Brian, could you try casp14-baker-mac.yml?
You can get the `legacy-blast` source code from here: `http://wwwuser.gwdg.de/~compbiol/data/csblast/releases/csblast-2.2.3_src.tar.gz`. And thank you for the suggestions about installing `hhsuite` and `psipred` from `conda`!
Sorry, messed it up: both `blast` and `csblast` are required. All pre-compiled `blast` versions are located here `https://ftp.ncbi.nlm.nih.gov/blast/executables/legacy.NOTSUPPORTED/2.2.26/`. I tested `blast-2.2.26-universal-macosx.tar.gz` on Darwin 18.7.0 where it worked fine. I'll have...
This may work too (at least works on Linux and an older Mac which I'm using for testing): `conda install -c bioconda blast-legacy`
Thanks a lot Brian! With you help all the installation process is now much more transparent.
I would start with the ones in the list below (python v 3.6): ``` tensorflow==1.14 pytorch==1.4 scikit-learn pandas tape_proteins ```
cool! it seems that one can also install `parallel` through `conda install` either from `bioconda` or from `conda-forge` channels
I have now changed the paths to relative ones. Some other bugs were fixed too. You may pull the updated code and try once again.
fixed this one too. thanks for catching all these bugs!
GPU memory should not be a problem for trRosetta if `crop="discont"` is used in step 5 of the pipeline. trRefine (step 7) may fail though on bigger proteins because of...