Fernando Cruz

Ok, I understand. Then I will set things to polish with raw Pacbio reads (~70x). The corrected reads have ~40x coverage. On a previous test with Pacbio corrected reads I...

Hi Aleksey, Adding it would be nice because it will more flexible. By the way, any hints about how to solve the problem with find_repeats.pl? it was raised here [issue...

Hi, Same problem here. After polishing, while creating the scaffold graph. STDOUT [Wed Jul 21 21:11:09 CEST 2021] Aligning the reads to the contigs [Wed Jul 21 21:51:18 CEST 2021]...

Okay, I missed that update. Thanks! F. El mié., 1 sept. 2021 15:04, Aleksey Zimin ***@***.***> escribió: > Hi, this is solved in 4.0.5 release. > > — > You...

Hi @fconstancias I was on holidays and haven't fixed this yet...

Dear @fconstancias We finally solve this. A colleague pointed me to the fact that the blastp "all vs. all" requires "file locking capability". And actually, the computing nodes on our...

Dear Dr. Hu, I've recently run nextdenovo using 33x ONT reads from a 1Gb genome. After running seq_stats the suggested seed cutoff was 0 bp. However as the minimum read...

Thanks, Having more data would be always great. I would love to use ultralong reads, but as far as I know it will require a lot more input DNA. I...

Hi Hu, I just read that latest release (version 2.3.1), _use non-seed reads to correct structural & base errors if seed depth < 35_ I guess those are the default...

Hi, Ok, I see. The option is just affecting to base level accuracy (i.e. use non-seed reads to correct structural & base errors if seed depth < 35). I was...