girdhar3

Colors of plotAvgProf

3

Is there any way I can give colors and linetype as an input to this function. The automated colors makes it very hard to distinguish different plots

No. of promoters in peaks / No of promoters in whole genome

2

### Prerequisites + [ ] Have you read [Feedback](https://guangchuangyu.github.io/chipseeker/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [ ] make sure your are using the latest release version * [ ] read the...

How do you define or quantify promoters, introns, exons , 5utr, 3utr, downstream and distal intergenic regions for a given set of peak?

Peak Annotations

5

Hi I have a peak file p1. I annotate files peakAnno

bamcompare input corrected chipseq file

1

Hi there, I am using bamCompare to create input_corrected chip file. Is that what you would suggest to use as input corrected bam file? **bamCompare -b1 chip_sample -b2 input_control_bam -of...