Giovanni Palla

@LLehner can you join zulip https://scverse.zulipchat.com/ helmholtz services are all down, will explain there.

also consider to clean up the docstrings by using stuff that we have in docrep already

@jhamman apologies for late reply. What I had in mind is basically an additional `parse` method that tries to correctly casts the input data in the schema. For example, given...

It looks great!  One first improvement could be to expose a parameters that explicitly ask for the number of rings in the neighbors (first 6 ring etc.). Btw, how...

That's great, I'll add Isaac to that project so he can see code (repo is private). Let's discuss whether to integrate in scanpy at next meeting! Thank you Sergei !

I'm sorry but I'm not sure I'm following you guys in the discussion, although from the figure it does seem that @Koncopd implementation is missing the n=2. Regarding radius, this...

quick practical comment on this very interesting discussion. @ivirshup shall we have this here or moved to the other package under development? We need to take a decision on this...

ok that's great, thank you! The `radius_neighbors` have very clear applications in fish-like data, and we are assmebling a tutorial to show exactly that. The n-rings as well especially in...

Yeah the edge weighing is definitely not clear we would've to test that. ok so only tests are missing ?

ok, after talking with @davidsebfischer we definitely want to have both radius as well as n_rings and also have graph transform functions so to weight edges differently (based on different...