Gianluca Tomasello

@arose Using ball and stick representation on the same structure leads to a similar issue (but connections are very rare). Maybe there is some other threshold to be adjusted? 

Ok, good to know. I just reported this since I thought this was a possible bug.

Here are a few screenshots from the video. I'll check again at the next chrome update. I'm on ubuntu with nvidia card   

I just updated to latest drivers but the problem is still present

Yes, I'm still seeing this is happening. Something changed though. It is less perceivable during animation but I just noticed that if I just manually change model index (**fast enough**)...

@arose I have just found out that the transparency issue can be observed also on other representations like spheres for example. (Tested with pdb id 1G03) 

I am no longer observing the original issue. Still observing sometimes overlaps with previous frame but much less than before and only with surfaces. I'll reopen if something changes

I'm still able to reproduce, but seems related to bloom only. Antialiasing should be fine. Here a state to reproduce [test.molj](https://github.com/user-attachments/files/17693075/test-bloom.molj.txt) 

@arose I'm seeing also issues produced by antialiasing. When Sharpening is enabled it seems to enhance the effect. Here is a test file to reproduce [smaa-issue.molx](https://github.com/user-attachments/files/23056877/smaa-issue.molx.txt)

I have also noticed transparency issues maybe due to the overlapping issue