Gert Hulselmans

pySCENIC 0.12.0 is out which works with recent versions of pyarrow (>=8.0.0). Also updating pip should help as they can install binary artifacts instead of compiling pyarrow from source.

Most functions accept a `num_workers` argument: https://github.com/aertslab/pySCENIC/search?q=num_workers https://github.com/aertslab/pySCENIC/blob/25a8211f900f73c8b0aacc717f7dc6d8419f95f5/src/pyscenic/cli/arboreto_with_multiprocessing.py#L146-L152

Try to run with less number of workers, You might have run out of RAM which killed one or more of the python processes.

There is a new Docker image now with pySCENIC 0.12.0. The segfault is likely caused by the fact that you are running on an older CPU type which doesn't support...

Add `--num_workers 4`

@Chengshu21 Limit the number of workers. Probably you ran out of memory and the OOM killer killed one of the python processes.

New TF lists are available at: https://resources.aertslab.org/cistarget/tf_lists/

A `log1p` implementation would be nice to have too.

It is created by the same company, so I assume they support the same platforms. I fixed also some parts of the `INSTALL` documentation: https://github.com/zevv/duc/pull/215

@Waelwindows How did you install the `syntact` plugin?