Gert Hulselmans

I have the same problem with Firefox 67.0.4 and 68.0 on Ubuntu 18.04: ```bash # Firefox memory usage increases like crazy in a matter of a few seconds. CPU usage...

@eddy-geek If you want fast CSV parsing and manipulation of columnnar data, take a look at polars: https://github.com/pola-rs/polars/ CSV parsing in polars uses csv core and once the CSV file...

@sstadick I did some benchmarking here (gzip decompression of gzip, pigz with zlib-ng and ISA-L https://github.com/zlib-ng/zlib-ng/issues/986 ISA-L was 3 times faster than zlib-ng and 6 times faster gzip decompresssion. I...

Merge is indeed the word I was looking for. file1.bed and file2.bed are sorted, combine them so the output is still sorted (by only sorting the needed blocks and not...

@jkbonfield would that still be true when usage of this feature would require index files to be there (and get the ordering from there)? In the worst case, the user...

> As you didn't mention this I was thinking of whole files without, but as you comment you can just do that with unix sort anyway so why would we...

`bedtools merge` does something completely different. First you need one file as input, secondly it will merge overlapping intervals to a new bed entry, not "sorting" input intervals and preserving...

At least good to know that it might be supported in the future. Supporting `--` as option to stop processing arguments would still be nice though.

I found a workaround in the meantime. As `pigz` is linked to `zlib`, I was able to use it with `zlib-ng` instead. `pigz` should support all `gzip` options. When using...

`fitsne/cppwrap.py` need this at the beginning to satisfy cython: ``` # distutils: language=c++ ``` # Modify PyPi package and install it ```bash # Get fitsne pip package. wget https://files.pythonhosted.org/packages/92/d4/e19298eb37d1b56d5b0675daf0443a42a17000258ab55797035b8ece2aeb/fitsne-1.1.1.tar.gz #...