Gert Hulselmans
Gert Hulselmans
`cisTopic` is deprecated. Use [pycisTopic](https://github.com/aertslab/pycisTopic/tree/master/pycisTopic) instead. `cisTopic` only supports the old Feather format, which you can find in the https://resources.aertslab.org/cistarget/databases/old/ subdir. e.g.: https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/region_based/hg19-regions-9species.all_regions.mc9nr.feather ```bash # Last 8 bytes for Feather...
Another error I just encountered (division seen as part of a regex): ```awk ❯ frawk 'BEGIN { t_array[0] = 5; t = 6; print "test/test\t" (t_array[0] + t); }' test/test...
@Jiawei-Navican Process substitution does not work with fastp. If you check the output FASTQ files you will see that the read names for R1 and R2 do not match. ```bash...
Is it possible to set the compression level when using: `bgzf::MultithreadedWriter`?
> What would be needed to provide apptainer packages from this repository? I have zero experience with them (in fact, I just heard of these today for the first time)....
Upstream: https://github.com/rust-lang/libz-sys/issues/104
> Same issue. > > ``` > polars/internals/io.py", line 107, in _prepare_file_arg > return BytesIO(file.read_bytes().decode(encoding_str).encode("utf8")) > ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ > UnicodeDecodeError: 'cp932' codec can't decode byte 0x8b in position 1: illegal multibyte...
@stalkerg Could you share the file?
I think the polars part works correctly. The "weird" part is happening in the python astimezone part as it will convert your date to the timezone you set, but will...
You can get an idea about what are the expensive parts of your query with `profile`: ```python >>> lf = pl.LazyFrame( ... { ... "a": ["a", "b", "a", "b", "b",...