Georgia Kesisoglou
Georgia Kesisoglou
### Name of the tool SVanalyser/SVbenchmark ### Tool homepage or repository https://github.com/nhansen/SVanalyzer ### Tool description SVbenchmark compares a set of “test” structural variants in VCF format to a known truth...
### Name of the tool rtgtools/vcfeval ### Tool homepage or repository https://github.com/RealTimeGenomics/rtg-tools ### Tool description RTG vcfeval performs variant comparison at the haplotype level, that is, it determines whether the...
Closes #3390 - [X] This comment contains a description of changes (with reason) - [X] There is example tool output for tools in the repository or attached to this PR...
### Name of the tool witty.er ### Tool homepage or repository https://github.com/Illumina/witty.er ### Tool description Wittyer is a tool for structural variant comparison ### Tool output example files [test2.HG002.lumpy.json](https://github.com/user-attachments/files/23651882/test2.HG002.lumpy.json) [test2.HG002.lumpy.vcf.gz](https://github.com/user-attachments/files/23651884/test2.HG002.lumpy.vcf.gz)...
## PR checklist This is a pull request to include the submodule t1k/run. Here is the tool repository: https://github.com/mourisl/T1K - [X] This comment contains a description of changes (with reason)....
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...