dgenies

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- [ ] Move tool options from DB to serialized job file - [ ] Add a parent relationship for jobs that part of a batch job

pbordron

conda install error with OSX Ventura on M1 mac

2

Trying to do a local install with conda on a M1 Mac running Ventura 13.5.2 (running python3.10.10) When running: conda create -c conda-forge -c bioconda -n dgenies dgenies I get...

mericl

Use colorblind (veridis) by default

pbordron

Related to #98

pbordron

If removing `python-crontab` and running D-dgenies in standalone mode, it failed `python-crontab` is not required for standalone mode. We must manage this dependency correctly. Related to #68

pbordron

Modernize the javascript stack

3

Move from old javascript to modern one

pbordron

It is a problem with bootstrap 4, bootstrap 5 solve the issue but it implies to move on modern js. Another solution is needed atm.

pbordron

Reducing the plot and releasing the mouse make the button bigger than the top axis. If we make the plot bigger again, the button rescale is broken A solution: replace...

pbordron

Track density must be taken in account when displayed

2

 Data are from ensembl: - top track (target): Arabidopsis_lyrata - right track (query): Arabidopsis_thaliana Wiggle files were computed this way with `sequenza-utils 3.0` with window of 1000: ``` zcat...

pbordron

Use pyfastx instead of biopython

1

[Pyfastx](https://pypi.org/project/pyfastx/) is faster than Biopython. **Warning** - pyfastx is 1-offset based (i.e. sequence start index is 1), biopython is 0-offset - sequence end is included in interval with pyfastx [start,...

pbordron