generalciao
generalciao
My understanding is that with anatomical (cellpose) mode, only the time-averaged fluorescence is used for cell detection, i.e. activity does not play a role in finding cells. Is that accurate?...
The GUI menu command "Load behavior or stim trace (1D only)" results in an error for me, when I point it to a .npy file (which I have confirmed loads...
I believe suite2p's main algorithms operate on pixels, without regards to the underlying pixel size (in micrometers). I feel like it would be useful to parse/import/input the pixel size in...
Feature request: being able to superimpose a scalebar (in micrometers or millimeters) over the main classification window would be a useful feature. I realize that this requires some knowledge of...
The GUI plot of selected ROI trace(s) uses frame number as the x-axis units (and label). It would be useful to (have the option to) show time in seconds, rather...
Fall.mat seems to contain all .npy outputs, except F_chan2 and Fneu_chan2. For convenience and consistency, it would be nice to include those in the Matlab out as well.
For submitting jobs on a cluster, I would like to be able to execute suite2p from the command-line, passing the experiment-specific parameters as arguments. I think this is mainly "data_path"...
Has anyone tried to to use Facemap on face movies where the pupil is bright (due to transcranial 2P laser illumination)? Maybe in combination with an "invert" preprocessing step?
What are the current recommended versions for a local installation under Windows? Is there a performance advantage to using (installing with) GPU support, if one only uses pretrained models? The...