generalciao

You might find a workaround by creating shortcuts / hard links / soft links on your Mac to simulate the same file paths as during the original (Ubuntu) run.

If the merges will be permanent, would it be possible to have an undo command in the GUI, for the most recent merge? Maybe that requires too much effort, not...

Looks like a typo in your command, should be "nomkl" not "nomlk". Does that work? conda install nomkl It turns off MKL, as per: https://stackoverflow.com/questions/66224879/what-is-the-nomkl-python-package-used-for On Tue, Jun 28, 2022...

This was indeed due to a mismatch in the size of my 1D trace. However, I'm leaving this open for now, because it seems that the function resample_frames is not...

Which suite2p versions are you (Richard, Sara) using? I see a new v0.11.0 release on pypi from a few days ago, which incorporates changes to allow non-default cellpose 2.0 models...

Richard, at first glance it looks like denoise.py is trying to work with 1320 blocks, which seems like way too many to me (even for your large images). There's an...

1. What is the status of nchannels from ops vs. sbx/mat metadata? 2. What is the status of using do_bidiphase vs. sbx_ndeadcols (conceptually related to the metadata question and cascading...

Hi Sven, the Fall.mat file contains a struct that contains all the outputs (which for Python are saved as separate .npy files). See for example the fields "F" and "iscell"...

Hi Robert, and thank you! Our camera is triggered on each 2P frame, so at least that is good to go :) We also have a background IR array similar...

As I recall, if you keep the (non-registered) binary files but delete the registered binary files, and keep everything else the same, suite2p will re-run the registration only, without again...