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Restore and update PAINT GOREF

4

Using the PMID for PAINT is not clear to many groups, so I have restored GOREF_0000033 and updated it > The Phylogenetic ANnotation using Gene Ontology (PAN-GO) method annotates evolutionary...

pgaudet

GO_REF:0000051 deprecated

3

We use this for NAS, I can't find the memo about deprecation, but I have 641 errors in the GO checks file. what reference should we use for NAS? I...

ValWood

Updated aspect to match GO id. This is due to new [change ](https://github.com/biolink/ontobio/pull/654) to ontobio that is repairing the aspect which is not part of this test

mugitty

Downloads table shows incorrect annotation counts

20

Reported by a user: http://current.geneontology.org/products/pages/downloads.html annotation counts are apparently showing counts calculated BEFORE IBAs are appended, so the counts are incorrect. Example: > Homo sapiens > EBI Gene Ontology Annotation...

suzialeksander

Add a SPARQL check for gorule-0000021: Valid sequence ID in with/from for Iss & related annotations

1

[Check with/from for sequence similarity evidence for valid database ID](https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000021.md) Until now we have had a slot in the rules for SQL implementations of rules. We'd like to swap this...

cmungall

Do not annotate terms

1

Hello, Right now we have 2 types of do not annotate flags: do_not_annotate, with 135 terms do_not_manually_annotate, with 72 terms 1) Do we need that distinction anymore? 2) I would...

pgaudet

Review NOT annotations with an extension

4

Hello, There is a new rule that would forbid NOT annotations with extensions. Most annotations are from MGI @ukemi https://docs.google.com/spreadsheets/d/172dNbAfDDGa11-inan_yQQPt6hONDPtwtigFxmPHra4/edit#gid=0 Can you have a look and see if that new...

pgaudet

Create new rule to prevent propagation of certain terms by orthology/similarity

3

_From @pgaudet on November 23, 2017 12:23_ Hello, Following up on #13004, we need to implement a rule to prevent propagation of GO:0001618 virus receptor activity annotations. It may make...

pgaudet

HTP-types will not be allowed as evidence for ISS+ISO

3

Action item from Oct 2017 GOC meeting. I assigned @cmungall - please assign someone else if appropriate.

pgaudet

GO Rules: Add example passing/failing data to go rules

6

Now that we have a yaml schema in place for the go rules to add example passing and failing data (https://github.com/geneontology/go-site/issues/956) we can add the data to the go rules....

dougli1sqrd