go-site

go-site copied to clipboard

gorule-0000027 must check that DBs are in the db-xref file and use the 'name' field

2

[gorule-0000027 ](https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000027.md) states that all identifiers must be valid, but this is vague. We will first check **Column 1 & 2: entity** - [ ] **DB (GAF column 1)** value...

pgaudet

Update gorule-0000037 : switched back to GO_REF:0000033

7

**Old rule:** IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference **Updated to:** "IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

pgaudet

New gorule-0000045: With/from: Verify that the combination of evidence (ECO) codes conform to the rules in eco-usage-constraints.yaml

2

P2GO rule

pgaudet

GO rules reports - notifications

3

Email reminder should be sent to each group about 2 weeks before the next release

pgaudet

gorule-0000027 misses some invalid ID in the with/field

9

Hello, @alexsign reported that some 'with' data in the exported Noctua GPADs contain "MGI" rather than "MGI:MGI". https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000027.md mentions that all db preixes should be found in the [dbxref file](https://github.com/geneontology/go-site/blob/master/metadata/db-xrefs.yaml)...

pgaudet

GO_REF:0000044 abstract

3

As part of the MGI imports project we noticed that link (http://www.geneontology.org/external2go/spsl2go) in the GO_REF:0000044 abstract didn't work. Is there an updated link? If so we should update it. https://github.com/geneontology/go-site/blob/master/metadata/gorefs/goref-0000044.md...

LiNiMGI

UniPathway link is not working

2

While checking links for identifiers that are in imported annotation files as part of the MGI imports project. We tested the link for UniPathway and it is dead. http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=UPA00155 Is...

ukemi

change https-> http to match minerva URI expansion for SGD

4

see [https://github.com/geneontology/go-fastapi #87](https://github.com/geneontology/go-fastapi/issues/87) GO-API expands `SGD:S000003407` to `https://identifiers.org/sgd/S000003407` using the `go.csv` context in prefixmaps. `go.csv` context in prefixmaps is generated by pulling in the `rdf_uri_prefix` from the db-xrefs.yaml. Since the...

sierra-moxon

pgaudet

On GO annotations download page, links to HTTP resources can cause browser issues

7

On the generated downloads page (https://current.geneontology.org/products/pages/downloads.html), links out to the release are still HTTP, gather than HTTPS causing browser complaints. These should be updated to HTTPS.

kltm