go-annotation

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Review annotations to GO:0008519 ammonium transmembrane transporter activity & children

1

GO:0008519 ammonium transmembrane transporter activity GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity GO:0015400 low-affinity secondary active ammonium transmembrane transporter activity According to the TCDB cross reference, GO:0008519 ammonium transmembrane...

pgaudet

Review annotations to children of GO:0015291 secondary active transmembrane transporter activity

1

- [x] GO:0015541 secondary active cyanate transmembrane transporter activity - [ ] GO:0015355 secondary active monocarboxylate transmembrane transporter activity - [x] GO:0015322 secondary active oligopeptide transmembrane transporter activity - [...

pgaudet

Incorrect Unirule mapping: UR000376192

4

**UniProt UniRule (ID and label):** UR000376192 **Sequences with problematic annotation (ID + gene/protein name):** mapping https://www.pombase.org/gene/SPBC337.15c (coq7) **Description of issue** Coq7 is 3-demethoxyubiquinol 3-hydroxylase activity (GO:0008682) (a monoxygenase) https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0008682 I...

ValWood

Review annotations to GO:0043621 protein self-association and GO:0032840 intramolecular proline-rich ligand binding

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Dear all, The proposal has been made to obsolete GO:0043621 protein self-association and GO:0032840 intramolecular proline-rich ligand binding see https://github.com/geneontology/go-ontology/issues/27101 Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/14eHLs7s81y_pUziDB58dtUfv244dNd2lZodeJAJ0OZs/edit?usp=sharing...

edwong57

PTN005164964 not all ubiquinone biosynthetic process

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* **PTHR ID & PTN node:** PTN005164964 ubiquinone biosynthetic process IBA with WBGene00000763 , coq3 , Q9NZJ6 , locus:2052761 , S000005456 , P17993 , 2380 , PTN005164964 * **Sequences with...

ValWood

* **PTHR ID & PTN node:** PTN000896085 * **Sequences with problematic annotation (ID + gene/protein name):** https://www.pombase.org/gene/SPCC645.13 transcription elongation regulator, PHD finger Bye1 https://www.pombase.org/gene/SPAC20H4.03c general transcription elongation factor TFIIS (tfs1)...

ValWood

Review annotations to GO:0015291 secondary active transmembrane transporter activity

4

Proposed change in label here: https://github.com/geneontology/go-ontology/issues/27495 GO:0015291 secondary active transmembrane transporter activity I want to check whether annotations are consistent with the proposal.

pgaudet

Review annotations to ncRNA terms GO:0110008 GO:0097064 GO:0034660 GO:0034470 GO:0098781 GO:0071029 GO:0071046

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Dear all, The proposal has been made to obsolete GO:0034471 ncRNA 5'-end processing No direct annotations (children have been rehoused) GO_0034661 ncRNA catabolic process No direct annotations (children will be...

ValWood

Review annotations to ncRNA metabolic process and children

3

Dear all, The proposal has been made to obsolete GO:0034471 ncRNA 5'-end processing GO:0034661 ncRNA catabolic process GO:0110008 ncRNA deadenylation GO:0097064 ncRNA export from nucleus GO:0034660 ncRNA metabolic process GO:0034470...

ValWood

TreeGrafter issue PANTHER:PTHR10333:SF42

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UniProtKB:O74736 | png2 | enables | GO:0004402    histone acetyltransferase activity | ECO:0007826   IEA | GO_REF:0000118 | PANTHER:PTHR10333:SF42 | 284812 Schizosaccharomyces pombe (strain 972 / ATCC 24843) | TreeGrafter Png2 is...

ValWood