Gaurav Vaidya

This could be implemented by providing [a custom node styler](https://github.com/phyloref/curation-tool/blob/7ab096888615b99fa50570734d45ddd9cb81072c/js/curation-tool.js#L567-L599). I think you could modify the following line to check the setting and to apply this internal node styler before...

@balhoff Thanks for the suggestion -- I tried that in 46f3ee00. Note that `getAnnotation()` has an odd signature, which differs from `annotateEntities()`: - `List annotateEntities(EntityFormatConfiguration configuration)` uses `configuration.reader` to store...

I think you can fix this by defining the "type" as ["string", "null"], [according to this StackOverflow answer](https://stackoverflow.com/a/16241482/27310). I'm not sure what the best way of incorporating this into LinkML...

I think something like this could be very neat to have in LinkML!

One possible fix would be to add a prefix (such as `slot_`) to any slot name that is a Python keyword or is not a valid Python identifer in [pythongen](https://github.com/linkml/linkml/blob/main/linkml/generators/pythongen.py)....

Hi Joe! I think Chris is referring to the work I'm doing as part of the [RDF subgroup of the HL7 ITS workgroup](https://confluence.hl7.org/pages/viewpage.action?pageId=66922543). I've specifically been working on translating FHIR...

> We should run tests to ensure the notebooks all run from beginning to end One way of doing that is to use `nbconvert` using the `--execute` flag to re-run...

Alternate proposal: we create two separate enumeration classes in LinkML based on [extensional and intensional definitions](https://en.wikipedia.org/wiki/Extensional_and_intensional_definitions): - ExtensionalEnumeration: needs to explicitly list every permissible value. - IntensionalEnumeration: needs to provide...

I remember we were discussing setting up PostGIS a few weeks ago in the phone conversations. Does anybody know what the status of that is? One of my labmates here...

What else remains to be done for this issue?