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gCNV adapter and track

Open garrettjstevens opened this issue 5 years ago • 1 comments

There's some info about gCNV output files and a sample of what a track might look like here (sample is on IGV web): https://github.com/igvteam/igv.js/pull/1055 (sample reproduced below).

image

I think "gCNV output" is referring to the output of GATK's GermlineCNVCaller. Also possible relevant is the last plot on the XHMM page (also reproduced below): image

garrettjstevens avatar Feb 05 '20 02:02 garrettjstevens

this seems like it would effectively be a "multi bedgraph"

see https://github.com/igvteam/igv.js/blob/master/test/data/gcnv/gcnv_large.bed.gz

it should work fine as an adapter to a multiquantitativetrack

cmdcolin avatar Mar 12 '24 19:03 cmdcolin