Cameron Gilchrist

That's odd, they should be put into the same groups for colour in that case. Is it possible for you to upload these files?

Sorry about the delay. Have added a note to the readme about GFF support, also added a fix as of 0.0.25 so it shouldn't crash when no CDS features are...

Hi @dutchscientist, sorry for taking so long to get back to this, pretty time poor at the moment. I remember from Twitter the `--ranges` argument wasn't working for you, do...

Hi, in the demo the gene cluster actually isn't being truncated in the middle - it consists of three different genomic loci as the cluster was found over three short...

Hi @CWoudstra, it looks like you are entering the files with spaces and commas, which will get broken up by the command line before clinker sees it - could you...

Just so I'm sure, you are running clinker in a folder which has a folder called `cluster` inside it containing your GenBank files? Or are your files in the same...

Nice, I'm glad that the PROKKA flag worked. Yeah, the performance is slow - honestly it's just because I never really envisioned people wanting to use it for entire genomes...

Cool, all-to-all alignment sounds right. Similarity isn't so important, so would realistically just need a distance matrix of identity or some other 0-1 score. I'll just have to have a...

Multiprocessing has been added with v0.0.10 using the `-j/--jobs` argument. Still thinking about the distance matrix bit but didn't make it into this release.

Hi, is it possible for you to upload the files? You can ignore those warnings, all they mean is that coding sequences could not find a parent gene sequence, so...