Cameron Gilchrist

I think this may have been fixed by https://github.com/gamcil/cblaster/pull/111 which explicitly forces sqlite transactions to be committed. I can reproduce the issue using the current v1.3.20 release, but not on...

The default value for `hitlist_size` was actually internally set to 5000, so I've lowered it to 500 with https://github.com/gamcil/cblaster/commit/af9a0e14209b1c64daaf310c4a7d7b08860c03ea which I'll include in the next release. Is this problem still...

This is likely a bug I introduced in the newer version. Do you remember which file/accession you used as input here and/or the session file?

Unfortunately clinker doesn't operate at the domain level, it explicitly looks for genes/CDS sequence features. You could maybe fake it by splitting the gene into separate features for each domain,...

Hi, it looks like no gene annotations are being picked up here. Do you have corresponding GFF files for your input FASTA files?