cblaster
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gamcil
Find clustered hits from a BLAST search
Dear helpers; Im trying to run a cblaster extract, but keeps getting an eroor. Any idea ? I have used it before, but prior to summer. ``` (base) [annll@login clinker-gbk]$...
Dear author I use the core and the full length of the same sequence for my calculations.The results are not the same.I wonder why this is happening,Do you have any...
Hi again - sorry to bother you with so many questions, but I can't find this in the help file... I was wondering if there is a way to extract...
Small small bugfix PR. Cblaster would throw sqlite3 errors because the previous connection wasn't being closed properly, and it wouldn't write tables as they weren't being committed. This code fixed...
I am using version 1.3.19. I found 3946 clusters in the search, but when I used the command "cblaster extract_clusters session.json -o example_directory", I found that only 50 gbk files...
Hi, I have been trying to extract clusters from my cblaster search. Many of the BGCs extract correctly but I often run into into the error: Traceback (most recent call...
Hi, I am now going to create my own database downloading from NCBI database. The format is .gb.gz in compressed format instead of its unziped one, .gbk. So, I am...
Repeated failure of search at results retrieving stage: S C:\Users\jarni\OneDrive - O365 Turun yliopisto\Documents\Dec18> cblaster search -qf .\modifiers_pseudocluster_dec18.fasta -p plot.html -s session.json Importing genomicsqlite failed, falling back to SQLite3 [09:17:46]...
Hello, I would really like to use cblaster because it sounds so useful for what I'm trying to do. Unfortunately, I seem to struggle with it at nearly every step....
do you think the cblaster will support blastn and nt db in the near future?
