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Extract issu

Open Akllarena opened this issue 3 years ago • 0 comments

Dear helpers;

Im trying to run a cblaster extract, but keeps getting an eroor. Any idea ? I have used it before, but prior to summer.

(base) [annll@login clinker-gbk]$ cblaster extract results_cblaster_june2021/session.json -q "WP_048548723.1_BclA_collagen-like_protein_[B.cereus]" -es -o BclA_hit_cluster.faa
[15:13:16] INFO - Starting cblaster extraction
[15:13:16] INFO - Loading session from: results_cblaster_june2021/session.json
Traceback (most recent call last):
  File "/mnt/users/annll/.local/bin/cblaster", line 8, in <module>
    sys.exit(main())
  File "/mnt/users/annll/.local/lib/python3.7/site-packages/cblaster/main.py", line 487, in main
    delimiter=args.delimiter,
  File "/mnt/users/annll/.local/lib/python3.7/site-packages/cblaster/extract.py", line 204, in extract
    session = Session.from_json(fp)
  File "/mnt/users/annll/.local/lib/python3.7/site-packages/cblaster/classes.py", line 53, in from_json
    return cls.from_dict(d)
  File "/mnt/users/annll/.local/lib/python3.7/site-packages/cblaster/classes.py", line 128, in from_dict
    query=Cluster.from_dict(d["query"]),
KeyError: 'query'
(base) [annll@login clinker-gbk]$

Akllarena avatar Aug 20 '21 13:08 Akllarena