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Only 50 clusters output with cblaster_extract

Open Foreverloveknowledge opened this issue 7 months ago • 1 comments

I am using version 1.3.19. I found 3946 clusters in the search, but when I used the command "cblaster extract_clusters session.json -o example_directory", I found that only 50 gbk files were output.

This is the result of the code "(cluster) C:\Users\ZJU>cblaster extract_clusters session.json -o example2_directory Importing genomicsqlite failed, falling back to SQLite3 [17:07:23] INFO - Starting cblaster plotting of clusters using clinker [17:07:23] INFO - Loading session from: C:\Users\ZJU\session.json [17:07:29] INFO - Extracting clusters that match the filters [17:07:29] INFO - Extracted 50 clusters. [17:07:29] INFO - Writing genbank files [17:07:29] INFO - Querying NCBI for 157 sequences."

I think it may be due to clinker. Is there any command that can be modified?

Foreverloveknowledge avatar Jul 06 '24 12:07 Foreverloveknowledge