gabster

I am attaching the log files for the demo run. Can you give the output of these commands? fasta2DB ecoli reads.fasta File reads.fasta, Line 12: Fasta line is too long...

Hi Govinda, thanks for the email. The problem was that I did not realize that the data needed to be downloaded from the website via wget. I did not know...

Hi there, Every time I try to run the command below, I get the error message ‘command not found’. What can I do? Thanks hinge filter --db ecoli --las ecoli.las...

Hi Govinda, Thanks very much for coming back to me. yes I had run source utils/setup.sh. The problem that I encounter now is: “hinge: line 10: Reads_filter: command not found”...

Hi Fei, ls -lAh HINGE/inst/lib/hinge ls: cannot access 'HINGE/inst/lib/hinge': No such file or directory I have installed ‘HINGE’ according to information given in GitHub Cheers G Gabriele Margos German National...

Hi again, this is what I get when I put ls –lah in the HINGE folder HINGE$ ls -lah total 116K drwxrwxr-x 13 gabriele gabriele 4,0K Aug 23 18:15 ....

Do you think there is a problem here: ./utils/build.shmake: Nothing to be done for 'all'. make: Nothing to be done for 'all'. make: Nothing to be done for 'all'. gcc...

How could I solve it? Any ideas? Thanks Gabi Gabriele Margos German National Reference Centre for Borrelia Bavarian Health and Food Safety Authority Veterinärstrasse 2 85764 Oberschleißheim Tel. 09131/68085883 email:...