Francisco Rodríguez-Algarra

Segmentation fault in index when including -s

6

Hi @jts, I am currently running `nanopolish index` on two direct RNA libraries, one obtained from a MinION and the other from a PromethION. The former seems to have worked...

RNA variation models

2

Hi @marcus1487 ! I'm aware that the models for modified RNA bases are still in preparation, but is there any way of calling variants from direct RNA data? There doesn't...

Adapter trimming in RRBS

13

Hi Felix, We've recently analysed a paired-end 150 bp RRBS dataset, which ended having insert sizes well below 100 bp. This really concerned us, because insert size is having a...

More alignments to sequence when included in whole genome than to the sequence alone

5

Hi Felix, We have recently started analysing publicly-available single-end RRBS data from an organism we had never considered in the past. We are mostly interested in the ribosomal DNA (rDNA),...