Guangyuan(Frank) Li

Hi @LedaKatopodi, Thanks for bringing this up and sorry for the inconvenience you were experiencing. The `UnboundLocalError` usually comes from the fact that there are peptides not of length 9...

Hi @Shunya15, I just did some google search and seemed to find a similar problem (https://github.com/scverse/scanpy/issues/1652), they suggested to update numba version v0.53 and may solve the problem. Just some...

So, this is an issue related to anndata, not an issue with scTriangulate. It has been detailed in the post like that (https://stackoverflow.com/questions/70234014/valueerror-index-is-a-reserved-name-for-dataframe-columns). I also encounter writing issue when using...

Hello @chalmers4c, Thanks for reaching out and sorry about the inconvenience! I tested the pip install on my mac today and it is successful [macos_install.txt](https://github.com/frankligy/scTriangulate/files/10147057/macos_install.txt), but then I realize from...

Hello @chalmers4c, So here's the solution that works for me, I followed the instructions on this page (https://stackoverflow.com/questions/64261546/how-to-solve-error-microsoft-visual-c-14-0-or-greater-is-required-when-inst). I went to (https://visualstudio.microsoft.com/visual-cpp-build-tools/) and download the c++ tool, follow the prompt....

Hi @cjiang310437 Thanks for bringing it up, I think the reason behind that is that I hard-coded the path of the temporary folder as `self.dir,'scTriangulate_local_mode_enrichr/`, whereas the trailing forward slash...

This issue now has been fixed by removing all hard-coded Unix style file paths "/", please download this specific commit (https://github.com/frankligy/scTriangulate/commit/2c45cb7dc2279ae094d04bcd1e37438a0d3d947a) using pip, instructions can be found (https://stackoverflow.com/questions/13685920/install-specific-git-commit-with-pip).

Hi @Bio-data-tricks, Sorry for the confusion and inconvenience, you may use the full SHA hash for this commit like below: ``` pip install git+https://github.com/frankligy/scTriangulate.git@2c45cb7dc2279ae094d04bcd1e37438a0d3d947a ``` Then run the program like...

Hi @Bio-data-tricks, Thanks for digging into that and that's all great questions! [1] Since we preprint the paper about a year ago, we've been exploring the possibility to apply it...

Hi @ChaDub, I am not sure why because as my screenshot showed, I tested on my windows PC as well and I can generate all the expected output without any...