BayesianTools

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Auto thinning inconsistent in getSample

4

Try ``` getSample(out, thin = "auto") getSample(getSample(out, thin = "auto"), thin = "auto") ``` For a matrix, thin = auto thins far too much - leads to weird behavior of...

florianhartig

Start values be outside prior range in DREAMzs / DEzs

7

I'm repeatedly getting these two warnings: ``` 4: Start values outside prior range 5: Z matrix values outside prior range ``` What does this mean? It seems to happen repeatedly...

evodevosys

Flexible density estimator for prior

3

It would be nice to have a more flexible density estimator for the createPriorDensity function. Possible options * gaussian random fields * https://cran.r-project.org/web/packages/esaddle/ * any other ML algorithm that gives...

florianhartig

Using https://cran.r-project.org/web/packages/cramer/cramer.pdf

florianhartig

Adaptive MCMC with parallel tempering

9

Hello Florian, Thank you for open-sourcing such a great library that I am hoping to use for my research in theoretical seismology. I was wondering if i could ask a...

AntonBiryukovUofC

Would these plots be this a useful addition to BT? https://twitter.com/rlmcelreath/status/1115626281352224768

florianhartig

Setup custom prior density

3

Hi Florian I am using BT 0.1.6 and for a mechanistic model and I have so far used `createUniformPrior` to setup my priors, which worked perfectly. I am now trying...

fkrauer

Check open branches

7

Hi Tankred / max ... we still have 3 open branches flying around that branched off from development. I think I'll nevertheless merge dev now in master, but can you...

florianhartig

interations = untilConvergence

1

I got a few comments that it would be nice to set iterations until convergence in runMCMC. I guess though that this would require an outer wrapper in runMCMC to...

florianhartig

in particular the samplers

florianhartig