BayesianTools

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getSample(whichParameters) breaks getSample(parametersOnly = FALSE)

1

A user should be able to do something like `getSample(parametersOnly = FALSE, whichParameters = 1)` and get back a parameter array with their first MCMC parameter followed by the Lposterior,...

twest820

DE, DEzs, DREAM, DREAMzs: settings$nrChains = x results in 2x or more chains

1

I wanted to suggest some possible documentation improvements based on observations of unexpected behavior and some looking through these samplers' source code. For context, I'm evaluating several variations of the...

twest820

DEzs eps parameter does not appear to be used

2

The settings for [DEzs](https://github.com/florianhartig/BayesianTools/blob/5a68f97519a29882c9e393c1e5d884c2a2e1ecfd/BayesianTools/R/mcmcDEzs.R) include the parameters `eps`, `eps.mult`, and `eps.add`. `eps.mult` is used in calculating `gamma_par` and `eps.add` is used in finding `x_prop`. However, searching the code for references...

twest820

Check supplementary info

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HI @mspeich - I have now finalized the supplementary info in https://github.com/florianhartig/BayesianTools/tree/master/Publications/SpeichEtAl-SMCForModelCalibration Could you have a final look if anything seems worth improving? Feel free to change text directly.

florianhartig

Complete documentation / help / unit tests for SMC

3

Hi @mspeich , fyi - the code for the paper is in branch SMC, in branch SMC-Merge I have started to integrate the new SMC in the general environment, including...

florianhartig

DREAM-derived BMA weights

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How can calculate Marginal posterior PDFs of the DREAM-derived BMA weights of monthly rainfall ?? How can I get the script? Please help

milonbrri

florianhartig

florianhartig

emcee: The MCMC Hammer https://arxiv.org/abs/1202.3665 https://projecteuclid.org/euclid.camcos/1513731992

florianhartig

Questions about DREAM-ZS implementation (parameters gamma, e and pCRupdate)

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Hi Florian and all, Thanks for this very nice package. I am currently developping a package for parameter estimation, uncertainty and sensitivity analysis for crop models (https://github.com/SticsRPacks/CroptimizR) and integrating the...

sbuis