flashton2003
flashton2003
Hello, I'm analysing some Cryptococcus neoformans (a haploid fungus) PacBio genome data. I noticed something strange when I was looking at some deletions which had low allele frequency. When only...
Perhaps it's just temporary, but https://yulab-smu.top/treedata-book/ seems to be down?
**Related To** - [ ] Bactopia **Is this related to a problem?** It's not well documented how bactopia handles long read only data. **Is this something you would like to...
Hi, It's nice that mob-suite tells me the plasmid in the reference database which is closest to each plasmid it identifies in my sample, but it would be good if...
Hello, We are running through the tutorial for the linear mixed model and are having some issues. We downloaded the data from [FigShare](https://figshare.com/articles/pyseer_tutorial/7588832), ran fsm-lite (can't see how to get...
Hello, For organisms that have point mutation detection supported, amr-finder-plus reports the amino acid change (e.g. S83F for QRDR mutations for Salmonella). Would it be possible to also report the...
Hello, I'm not sure that Github issue is the best place for this, but it is the suggested channel for support so will give it a go. I had some...
I'm trying to access https://bactopia.github.io/bactopia-tools/ but it doesn't load, it just keeps appending latest to the URL, after a few seconds I end up with this https://bactopia.github.io/bactopia-tools/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/latest/ and the page...
Hello, We've isolated some subsp salamaes for one of our projects. I have a few questions about the SISTR output for these isolates: sample | cgmlst_found_loci | cgmlst_matching_alleles | cgmlst_subspecies...
Hi guys, I'm trying to download the kraken2 gtdb database using google_download.sh. The output I get is ``` % Total % Received % Xferd Average Speed Time Time Time Current...