Laura Hughes

icon indicating a website link lauradhughes.com

icon company Scripps Research icon location California, USA icon location Scientist • Data Scientist • Visualization Enthusiast. Institute Investigator at Scripps Research; frequent collaborator with @SuLab @cvisb @HughesLab @tessam

Results 72 issues of Laura Hughes

Incorporate root-to-tip estimates to flag potential VOCs

Create handlers to access growth rate data index (or use in-built BioThings suite)

Create a "what lineages are growing" tracker

Incorporate growth rates into location reports pages

Create index to store growth rates

rational, relativized growth rates by location / week with corresponding estimate of uncertainty.

Improve lineage/mutation exploration space better

Enable questions such as "What are the mutations shared by genetically related lineages?"

Improved detection of unrealistic date metadata handling

See Coviz -- look at the number of expected mutations v. clockrate to identify timeframes that seem out of whack.

Epi locations metro areas include micropolitan areas (?)

@mindoftea : can you check on how the metro areas are calculated in the epi script? Ideally, it should roll counties up into the CBSA areas and filter out the...

Add nucleotide mutations to characteristic mutations

6 comment

Suggested in #279; related to #265 and #258. Would require changes to API and front-end.

Remove all outdated code for typeahead lookup of epi locations

The previous code to populate the possible locations for the location lookup on epi pages is outdated and needs to be removed (since it's a big query and amount of...