Laura Hughes

GENOMICS API: tracking bad query 500 errors

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Not critical to fix now, but logging them for future cleanup (maybe by @juliamullen ?) http://kenny.scripps.edu:8888/api/prevalence?pangolin_lineage=B.1.1.1.7

... or maybe a few days before the first appearance to establish a zero-baseline before they take over the world. e.g. [B.1.1.7](http://kenny.scripps.edu:8888/api/prevalence?pangolin_lineage=B.1.1.7) should start on 2020-09-20 or a few days...

Is the prevalence increasing or decreasing recently? How does it compare to other lineages? Where is it the most prevalent? What does the literature say?

Add a section of the fastest growing lineages in world, or for a particular country/state. Need to account for variability in sequencing / sampling. What increases are due to expansion,...

GENOMCIS API: Expose mutation frequency in characteristic mutations

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Nucleotide-level prevalence of codons within characteristic set of mutations ... note: Is this important? I'm inclined to ignore ti

Finally a reason to make an arrow map???

GENOMICS API: Wildcard search for any mutation at a given location

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Allow any non-synonymous mutation, e.g. S:K417? to capture all mutants of K417 in the spike protein