Filipe G. Vieira

multiext support for named output

1

**Is your feature request related to a problem? Please describe.** Right now it is not possible to cache a rule's output when there are several named output files. With several...

Currently ngsF only works when all sites are variables (call SNPs first). One way would be to use a weighted average but it only seems to work with extreme weights...

Currently, individual loglkl is disabled since, for sake of speed, it only calculates the fast_lkl. Should implement the correct individual loglkl

Arbitrary ploidy to account for X/Y and poliploid. See: http://www.genetics.org/content/186/4/1367.full

Allow for negative F (-1 < F < 1) to accommodate other deviations from HWE

Implement accelerated EM method see: http://www.jstor.org/stable/2290716

LKL currently not threaded.

Support for size units (Mb, Gb, Tb, Mib, Gib, ...)

1

Would it be possible to also support size units? I am looking to convert any string (e.g. "64 Gb") into megabytes. I guess i need something similar to https://stackoverflow.com/questions/1094841/get-human-readable-version-of-file-size or...

Are you planning to add this to conda?

Somalier module: add pairwise stats

1

**Is your feature request related to a problem? Please describe.** Right now, most pairwise stats (e.g. `IBS0`, `IBS2`) are missing. The only exception is `relatedness` that is presented as a...