Filipe G. Vieira

Results 110 issues of Filipe G. Vieira

Dear all, I've only recently came across Miller but it is quite impressive! However, I am now trying to join two CSV files by a column but would like to...

feature-request

- [x] This comment contains a description of changes (with reason) - [ ] There is example tool output for tools in the repository or attached to this PR -...

module: new
WIP

### Description of feature Is it possible to plot confidence areas (e.g. confidence intervals or standard deviations) around a line graph? Like [this](https://stackoverflow.com/a/32616695) example.

core: front end

### Description of bug I am trying to plot the `FastQC` module multiple times (like [here](https://multiqc.info/docs/reports/customisation/#running-modules-multiple-times)) but, even though all looks good in the `html` report, only the last data...

core: back end

### Description of feature Right now the `find_log_files` function can either read the file or return a filehandle, but only for text files. Would it be possible to also support...

core: back end

### Name of the tool nonpareil ### Tool homepage https://github.com/lmrodriguezr/nonpareil ### Tool description Estimate metagenomic coverage and sequence diversity ### Tool output This is a second attempt to issue #474....

module: new

### Instructions The github issue tracker is for bug reports, feature requests, and API documentation requests. General questions about how to use the GATK, how to interpret the output, etc....

community-request
learn GATK

Any plans to add a `MultiQC` module for `seqkit`? It would be quite usefull for the `seqkit stats` function.

I am trying to set some `default_preferred_units`: ``` from pint import UnitRegistry ureg = UnitRegistry() ureg.default_preferred_units = [ureg.minute, ureg.mebibyte] ureg.autoconvert_to_preferred = True unit = ureg.Quantity ``` But they do not...

**Is your feature request related to a problem? Please describe.** Right now, to `cat` several files, `qsv` allows: ``` qsv cat rowskey --group fullpath --group-name path 1.tsv 2.tsv ``` or...

enhancement